August 8–10. Iowa State University, Ames, Iowa |
Sponsored by: |
John Chambers Programming with R
9:00-9:35 Eun Kyung Lee arrayMissPattern: Software for Missing Pattern Analysis of Microarray Data
9:35-10:10 John Verzani gWidgets: a toolkit independent API for building GUIs in R
10:10-10:30 Discussion
9:00-9:25 D.G. Butler, B.R. Cullis, A.R. Gilmour Asreml-R: an R package for mixed models using residual maximum likelihood
9:25-9:50 Kenneth Knoblauch, Laurence T. Maloney MLDS: Maximum Likelihood Difference Scaling in R
9:50-10:15 Terry M. Therneau The survival package: Updates and future directions
10:15-10:30 Discussion
Chair: Olivia Lau
10:45-11:20 Ben Hansen Flexible, Optimal Matching for Comparative Studies using the optmatch package
11:20-11:55 Jasjeet Sekhon R and the Future of Social Science Data and Methods: NP-hard Problems and Large Datasets
11:55-12:15 Discussion
10:45-11:10 Dirk Eddelbuettel, David Vernazobres, Albrecht Gebhardt, Steffen Moller apt-get install cran bioc: On automated builds of 1700 R packages for Debian
11:10-11:35 Adam L. Lyon Analysis of Experimental Particle Physics Data in R with the RootTreeToR Package
11:35-12:00 Dirk Eddelbuettel and Robert Brown RDieHarder: An R interface to the DieHarder suite of Random Number Generator Tests
1:30-1:55 Philip Turk Experiences using R to teach undergraduate statistics courses
1:55-2:20 Daniel Kaplan Using R for Introductory Calculus and Statistics
2:20-2:45 Amy Froelich and Michael D. Larsen Using R in undergraduate and graduate probability and mathematical statistics courses
2:45-3:00 Discussion
1:30-1:55 Michael Lawrence RGtk2
1:55-2:20 Suh-Yeon Choi, Michael Lawrence, Dianne Cook, Heike Hofmann, Lauralynn Kourtz, Kristi Snell, Basil J. Nikolau and Eve Syrkin Wurtele Metabolomic and transcriptomic data analysis of PHB-producing Arabidopsis using R, exploRase and GGobi
2:20-2:45 John Verzani pmg: Poor man's GUI
2:45-3:00 Discussion
3:15-3:50 Paul Hewson R-books: integrating R into an e-book
3:50-4:25 Max Kuhn odfWeave and Data Analysis Platforms
4:25-4:45 Discussion
3:15-3:40 K. M. Mullen, L. J. G. W. van Wilderen, M. L. Groot and I. H. M. van Stokkum Standard error estimation and multi-dataset modeling with TIMP
3:40-4:05 Thomas Lumley Developments in survey analysis in R
4:05-4:30 Felipe Mendiburu, Reinhard Simon Agricolae: A Free Statistical Library for Agricultural Research
4:30-4:45 Discussion
5:00-5:30 Martin Maechler Sparse Matrices for Large Data Modeling
5:30-6:00 Doug Bates Fitting Linear, Generalized Linear and Mixed-effects Models to Large Data Sets
6:00-6:25 D. Adler, O. Nenadic, W. Zucchini, C. Glaser. The ff package: Handling Large Data Sets in R with Memory Mapped Pages of Binary Flat Files.
5:00-5:25 Jonathan M. Lees SeisR and FocR: Earthquake and Seismic Analysis in R
5:25-5:50 Jon Hobbs Manipulating Spatio-temporal Environmental Data in R using the ncdf package
5:50-6:15 Andrew D. Gelman, Gary King, Andrew C. Thomas JudgeIt II (for R): A Program for Evaluating Electoral Systems and Redistricting Plans
6:15-6:30 Discussion
Chair: Antony Unwin
9:00-9:35 Deepayan Sarkar lattice
9:35-10:10 Hadley Wickham ggplot
10:10-10:30 Discussion
9:00-9:25 Jose Guerra, Donald E. Franke Using Random Forests procedures of R combined with mixed models to analyze animal breeding data
9:25-9:50 Krishna Kumar Learning from Currency Crises
9:50-10:15 Brian Peterson and Peter Carl PerformanceAnalytics
10:15-10:30 Discussion
Chair: Marc Schwartz
Panelists:
10:45-11:10 Duncan Murdoch, Daniel Adler RGL in 2007 (R code)
11:10-11:35 Simon Urbanek TBA
11:35-12:00 Heike Hofmann and Dianne Cook Graphical methods for longitudinal data
1:30-1:55 Gregg R. Lind and Michael B. Miller Power Calculations for Genetic Studies
1:55-2:20 Jason Sinnwell ibdreg, A package using regression methods to test for genetic linkage with covariates
2:20-2:45 Jing Hua Zhao Use of R in Genetic Association Studies
2:45-3:00 Discussion
1:30-1:55 Julie Josse, Sebastien L. and Francois Husson Multivariate Analysis with the FactoMineR package
1:55-2:20 James Ramsay, Hadley Wickham, Spencer Graves Functional Data Analysis in Matlab and R
2:20-2:45 Søren Højsgaard Packages for gRaphical modelling in R
(1) Jason Owen The R Guide: A Manual on R for Everyone
(2) Panayotis Giannakouros and Lihua Chen A Free Software DVD for statistical computing
(3) Guennadi Andrianov A case for the Uncertainty Treatments with R: Generic Approach in Guidelines and Open Source SW
(4) Dai Feng and Luke Tierney Misc3D: A Package to Draw 3D Plots
(5) Stephen Weigand Some ideas on creating publication-quality tables in R
(6) Jeffrey Horner Brewing with RApache
(7) Michael Lawrence rsbml: An R package for importing SBML data
(8) Charlotte Wickham An exploratory stroll along the beach
(9) Garrett Dancik and Karin Dorman mlgp: an R package for maximum likelihood estimation of Gaussian processes
(10) Chinthaka Kuruwita A Bayesian Approach for Bandwidth Selection in Kernel Density Estimation
(11) Jungeun Song Bayesian Estimation of Curves or Surfaces
(12) Panayotis Giannakouros and Lihua Chen An Xgrid oriented R package for prediction-based model combining
(13) Jeff Ryan quantmod: Quantitative Financial Modelling Framework for R
(14) C. Glaser, D. Adler, O. Nenadic, W. Zucchini, S. Sperlich R General Purpose Computing on Graphics Processing Units
(15) D. Adler, O. Nenadic, W. Zucchini, C. Glaser The ff package: Handling Large Data Sets in R with Memory-Mapped Pages of Binary Flat Files
(16) Mario Pineda-Krch GillespieSSA: A stochastic simulation package for R
(1) Elaine A. McVey, Perry Haaland, Friedrich Hahn, Megan Gottlieb, Ruiling Yuan Sample-Size Determination for a Flow Cytometry Assay
(2) Kyongryun Lee, Michael Lawrence, Julie Dickerson Cytoscript: Running R in Cytoscape
(3) Elizabeth Atkinson, Eric Lunde, Patrick Votruba, Mariza de Andrade An R library for quantitative trait linkage analysis
(4) Vinay Ravindrakumar, Michael Bauer Identification of correlated genes in malignant gliomas
(5) Heather Babka, Suh-Yeon Choi, Michael Lawrence, Di Cook, Beth L. Fatland, Basil J. Nikolau, Eve Syrkin Wurtele Exploratory Analysis of Transcripmtomic Data from Antisense ATP-Citrase Lyase Arabidopsis thaliana Supplemented with Malonic Acid using R and GGobi
(6) Jose Lima-Guerra Automation of phenotypic analysis with R software
(7) Lei Yang ENM: an R package for the computational modelling and analysis of protein dynamics using elastic network models
(8) Scott Diegel and Erik Iverson Interim Data Monitoring Reports in Clinical Trials
(9) Ryan Moore blocktools: High-dimensional Nonbipartite Matching for Social Science Experiments
(10) Derek H. Ogle and George R. Spangler FSA: R Functions for Fisheries Stock Assessment
(11) Ling Li, Wenxu Zhou, Wengang Zhou, Dan Nettleton, Mark Westgate, Basil Nikolau, and Eve Syrkin Wurtele Analyses of soybean seed transcriptomics data and metabolomics data using R: A systems biology approach to understanding seed composition