- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-3) 13.3.0
GNU Fortran (Debian 13.3.0-3) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘simdata/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘simdata’ version ‘0.4.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘simdata’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/8s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [52s/128s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Demo.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-2-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 82964 bytes
Input file size = 83942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 78078
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 78078
Output IDAT size = 78078 bytes (4886 bytes decrease)
Output file size = 78156 bytes (5786 bytes = 6.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-3-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 57628 bytes
Input file size = 58570 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52997
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52997
Output IDAT size = 52997 bytes (4631 bytes decrease)
Output file size = 53075 bytes (5495 bytes = 9.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-5-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54392 bytes
Input file size = 54542 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48410
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48410
Output IDAT size = 48410 bytes (5982 bytes decrease)
Output file size = 48488 bytes (6054 bytes = 11.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-6-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43172 bytes
Input file size = 43310 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34528
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34528
Output IDAT size = 34528 bytes (8644 bytes decrease)
Output file size = 34606 bytes (8704 bytes = 20.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-8-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 41932 bytes
Input file size = 42850 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38596
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 38544
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 38544
Output IDAT size = 38544 bytes (3388 bytes decrease)
Output file size = 38622 bytes (4228 bytes = 9.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-8-2.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21447 bytes
Input file size = 21549 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21128
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651
Output IDAT size = 19651 bytes (1796 bytes decrease)
Output file size = 19729 bytes (1820 bytes = 8.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-9-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 83149 bytes
Input file size = 83347 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72813
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72813
Output IDAT size = 72813 bytes (10336 bytes decrease)
Output file size = 72891 bytes (10456 bytes = 12.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-10-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38022 bytes
Input file size = 38148 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31651
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31651
Output IDAT size = 31651 bytes (6371 bytes decrease)
Output file size = 31729 bytes (6419 bytes = 16.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-11-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43705 bytes
Input file size = 43843 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34712
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34712
Output IDAT size = 34712 bytes (8993 bytes decrease)
Output file size = 34790 bytes (9053 bytes = 20.65% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-11-2.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45843 bytes
Input file size = 45981 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36587
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36587
Output IDAT size = 36587 bytes (9256 bytes decrease)
Output file size = 36665 bytes (9316 bytes = 20.26% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-11-3.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58796 bytes
Input file size = 58958 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45953
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45953
Output IDAT size = 45953 bytes (12843 bytes decrease)
Output file size = 46031 bytes (12927 bytes = 21.93% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-13-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 43531 bytes
Input file size = 44449 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40075
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 40024
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 40024
Output IDAT size = 40024 bytes (3507 bytes decrease)
Output file size = 40102 bytes (4347 bytes = 9.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-15-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 43386 bytes
Input file size = 44304 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39897
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 39831
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 39831
Output IDAT size = 39831 bytes (3555 bytes decrease)
Output file size = 39909 bytes (4395 bytes = 9.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-17-1.png
768x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 41481 bytes
Input file size = 42399 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37985
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 37965
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 37965
Output IDAT size = 37965 bytes (3516 bytes decrease)
Output file size = 38043 bytes (4356 bytes = 10.27% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-25-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19617 bytes
Input file size = 19719 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16741
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16741
Output IDAT size = 16741 bytes (2876 bytes decrease)
Output file size = 16819 bytes (2900 bytes = 14.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-26-1.png
768x576 pixels, 8 bits/pixel, 105 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13835 bytes
Input file size = 14252 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12482
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 12156
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 12156
Output IDAT size = 12156 bytes (1679 bytes decrease)
Output file size = 12234 bytes (2018 bytes = 14.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/simdata.Rcheck/vign_test/simdata/vignettes/Demo_files/figure-html/unnamed-chunk-28-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 102477 bytes
Input file size = 102699 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 100892
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 100892
Output IDAT size = 100892 bytes (1585 bytes decrease)
Output file size = 100970 bytes (1729 bytes = 1.68% decrease)
--- finished re-building ‘Demo.Rmd’
--- re-building ‘NORTA_demo.Rmd’ using rmarkdown
Quitting from lines 167-183 [unnamed-chunk-2] (NORTA_demo.Rmd)
Error: processing vignette 'NORTA_demo.Rmd' failed with diagnostics:
no applicable method for 'left_join' applied to an object of class "NULL"
--- failed re-building ‘NORTA_demo.Rmd’
--- re-building ‘Technical_documentation.Rmd’ using rmarkdown
--- finished re-building ‘Technical_documentation.Rmd’
SUMMARY: processing the following file failed:
‘NORTA_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR