- using R version 4.4.1 Patched (2024-06-25 r86866)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-1) 13.3.0
GNU Fortran (Debian 13.3.0-1) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘gggenomes/DESCRIPTION’ ... OK
- this is package ‘gggenomes’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gggenomes’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s/26s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [141s/162s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
focus 13.657 0.148 15.700
add_tracks 11.165 0.349 12.531
gggenomes 11.305 0.035 13.284
read_alitv 9.588 0.309 12.724
geom_gene 9.119 0.031 10.118
pick 7.843 0.103 9.445
flip 7.793 0.117 8.664
geom_link 7.446 0.008 8.016
scale_x_bp 6.409 0.103 7.193
geom_bin_label 6.041 0.023 7.589
position_strand 5.861 0.008 6.836
geom_wiggle 5.676 0.036 5.874
shift 5.375 0.051 5.893
geom_seq 4.994 0.008 5.269
geom_seq_break 4.624 0.059 5.164
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [5s/6s] OK
Running ‘find_missing.R’ [2s/2s]
Running ‘testthat.R’ [3s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [62s/77s] OK
- checking PDF version of manual ... [10s/12s] OK
- checking HTML version of manual ... [5s/7s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK