- using R version 4.3.3 (2024-02-29)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘bullseye/DESCRIPTION’ ... OK
- this is package ‘bullseye’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘bullseye’ can be installed ... [4s/5s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/4s] NOTE
pairwise.matrix: no visible global function definition for ‘%||%’
Undefined global functions or variables:
%||%
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] ERROR
Running examples in ‘bullseye-Ex.R’ failed
The error most likely occurred in:
> ### Name: pair_ace
> ### Title: Alternating conditional expectations correlation
> ### Aliases: pair_ace
>
> ### ** Examples
>
> pair_ace(iris)
Error in rownames(m) %||% paste0("V", seq_along(xindex)) :
could not find function "%||%"
Calls: pair_ace -> pairwise -> pairwise.data.frame -> pairwise.matrix
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [4s/5s] ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
4. └─bullseye:::pairwise.data.frame(iris[1:4, ])
5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)
── Error ('test-plot_pairwise.R:9:3'): plot pairwise linear ────────────────────
Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"
Backtrace:
▆
1. ├─bullseye::plot_pairwise_linear(pairwise(iris[1:4, ])) at test-plot_pairwise.R:9:3
2. │ └─bullseye:::check_pairwise(scores)
3. ├─bullseye::pairwise(iris[1:4, ])
4. └─bullseye:::pairwise.data.frame(iris[1:4, ])
5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)
[ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [3s/4s] ERROR
Errors in running code in vignettes:
when running code in ‘calc_pairwise.Rmd’
...
<td style="text-align:left;"> [0,1] </td>
<td style="text-align:left;"> NA </td>
</tr>
</tbody>
</table>
> sc_dcor <- pair_dcor(penguins)
When sourcing ‘calc_pairwise.R’:
Error: could not find function "%||%"
Execution halted
when running code in ‘integrating.Rmd’
...
> library(ggiraph)
> set_girafe_defaults(opts_sizing = opts_sizing(rescale = FALSE,
+ width = 0.5))
> sc <- pairwise_scores(peng)
When sourcing ‘integrating.R’:
Error: could not find function "%||%"
Execution halted
when running code in ‘vis_pairwise.Rmd’
...
> library(ggiraph)
> set_girafe_defaults(opts_sizing = opts_sizing(rescale = FALSE,
+ width = 0.5))
> plot(pair_cor(peng))
When sourcing ‘vis_pairwise.R’:
Error: could not find function "%||%"
Execution halted
‘calc_pairwise.Rmd’ using ‘UTF-8’... failed
‘integrating.Rmd’ using ‘UTF-8’... failed
‘vis_pairwise.Rmd’ using ‘UTF-8’... failed
- checking re-building of vignette outputs ... [16s/25s] NOTE
Error(s) in re-building vignettes:
--- re-building ‘calc_pairwise.Rmd’ using rmarkdown
Quitting from lines 44-46 [unnamed-chunk-3] (calc_pairwise.Rmd)
Error: processing vignette 'calc_pairwise.Rmd' failed with diagnostics:
could not find function "%||%"
--- failed re-building ‘calc_pairwise.Rmd’
--- re-building ‘integrating.Rmd’ using rmarkdown
Quitting from lines 57-62 [corrplot_assoc] (integrating.Rmd)
Error: processing vignette 'integrating.Rmd' failed with diagnostics:
could not find function "%||%"
--- failed re-building ‘integrating.Rmd’
--- re-building ‘vis_pairwise.Rmd’ using rmarkdown
Quitting from lines 52-53 [unnamed-chunk-3] (vis_pairwise.Rmd)
Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics:
could not find function "%||%"
--- failed re-building ‘vis_pairwise.Rmd’
SUMMARY: processing the following files failed:
‘calc_pairwise.Rmd’ ‘integrating.Rmd’ ‘vis_pairwise.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/8s] OK
- DONE
Status: 3 ERRORs, 2 NOTEs
- using check arguments '--no-clean-on-error '