- using R Under development (unstable) (2024-06-28 r86850)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.8 (1+b1)
Debian flang-new version 18.1.8 (1+b1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘gggenomes/DESCRIPTION’ ... OK
- this is package ‘gggenomes’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gggenomes’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [24s/31s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [148s/182s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
focus 14.121 0.177 18.537
gggenomes 12.042 0.098 15.108
add_tracks 11.733 0.357 14.172
read_alitv 9.979 0.051 13.431
geom_gene 9.732 0.083 11.544
geom_link 8.282 0.066 10.104
pick 8.176 0.048 10.351
flip 7.856 0.126 10.017
scale_x_bp 6.902 0.218 8.615
geom_bin_label 6.151 0.076 7.107
position_strand 6.073 0.017 7.142
geom_wiggle 5.982 0.040 7.056
shift 5.595 0.095 6.907
geom_seq 5.217 0.013 5.825
geom_seq_break 4.714 0.031 5.595
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [6s/8s] OK
Running ‘find_missing.R’ [2s/3s]
Running ‘testthat.R’ [3s/4s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [65s/85s] OK
- checking PDF version of manual ... [10s/13s] OK
- checking HTML version of manual ... [5s/8s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK